Outline of Evolution

Evolution – change in heritable traits of biological organisms over generations due to natural selectionmutation, gene flow, and genetic drift. Also known as descent with modification. Over time these evolutionary processes lead to formation of new species (speciation), changes within lineages (anagenesis), and loss of species (extinction). “Evolution” is also another name for evolutionary biology, the subfield of biology concerned with studying evolutionary processes that produced the diversity of life on Earth.

Here is the outline of evolution:

Fundamentals about evolution

Introduction

Theory of Evolution

Theory of Evolution

Basic principles

  • Macroevolution – Evolution on a scale at or above the level of species
    • Speciation – Evolutionary process by which populations evolve to become distinct species
      • Natural speciation
        • Allopatric speciation – Speciation that occurs between geographically isolated populations
        • Peripatric speciation – Speciation in which a new species is formed from an isolated smaller peripheral population
        • Parapatric speciation – Speciation within a population where subpopulations are reproductively isolated
        • Sympatric speciation – A process through which new species evolve from a single ancestral species while inhabiting the same geographic region
      • Artificial speciation
        • Animal husbandry – Management, selective breeding, and care of farm animals by humans
        • Plant breeding – The art and science of changing the traits of plants in order to produce desired characteristics
        • Genetic engineering – Direct manipulation of an organism’s genome using biotechnology
      • Hybrid speciation – Form of speciation involving hybridization between two different species
    • Despeciation – The loss of a unique species of animal due to its combining with another previously distinct species
    • Anagenesis – Gradual evolutionary change in a species without splitting
    • Extinction – Termination of a taxon by the death of the last member
  • Microevolution – change in allele frequencies that occurs over time within a population
    • Artificial selection – Process by which humans use animal and plant breeding to selectively develop particular phenotypic traits
    • Natural Selection – Mechanism of evolution by differential survival and reproduction of individuals
      • Sexual selection – Mode of natural selection involving the choosing of and competition for mates
    • Mutation – Alteration in the nucleotide sequence of a genome
    • Gene flow – The transfer of genetic variation from one population to another
    • Genetic drift – The change in the frequency of an existing gene variant in a population

Subfields

  • Biogeography – The study of the distribution of species and ecosystems in geographic space and through geological time
  • Ecological genetics – The study of genetics in natural populations
  • Evolutionary biology – The study of the processes that produced the diversity of life
  • Evolutionary ecology – Study of how interactions among species and between species and their environment affect species through selection and adaptation
  • Evolutionary physiology – Study of changes in a population’s functional characteristics in response to selection over time
  • Evolutionary taxonomy – Classification of organisms based on shared descent, serial descent, and degree of evolutionary change
  • Experimental evolution – Use of laboratory and field experiments to explore evolutionary dynamics
  • Molecular Evolution – process of change in the sequence composition of cellular molecules across generations
  • Phylogenetics – Study of evolutionary relationships between organisms
  • Population genetics – Study of genetic differences within and between populations including the study of adaptation, speciation, and population structure
  • Paleontology – The scientific study of life prior to roughly 11,700 years ago
  • Systematics – The study of the diversification and relationships among living things through time

History

Charles Darwin

Charles Darwin

Evolutionary theory and modelling

See also Basic principles (above)

Population genetics

  • Population genetics – Study of genetic differences within and between populations including the study of adaptation, speciation, and population structure
  • Process
    • Mutation – Alteration in the nucleotide sequence of a genome
    • Selection
      • Natural Selection – Mechanism of evolution by differential survival and reproduction of individuals
        • Sexual selection – Mode of natural selection involving the choosing of and competition for mates
      • Artificial selection – Process by which humans use animal and plant breeding to selectively develop particular phenotypic traits
      • Ecological selection – Natural selection without sexual selection
    • Gene flow – The transfer of genetic variation from one population to another
    • Genetic drift – The change in the frequency of an existing gene variant in a population
      • Small population size – Statistical effects of small numbers on a population
      • Population bottleneck – The effects of a sharp reduction in numbers on the diversity and robustness of a population
      • Founder effect – Loss of genetic variation that occurs when a new population is established by a very small number of individuals
      • Coalescent theory – A model for tracing the history of genetic variation
  • Variation
    • Genetic variation – The concept and mechanisms of variation in alleles of genes
      • Genetic diversity – The total number of genetic characteristics in the genetic makeup of a species
      • Gene frequency – The relative frequency of a variant of a gene at a particular locus in a population
      • Polymorphism (biology) – Occurrence of two or more clearly different morphs or forms in the population of a species
  • Key concepts
  • Effects of selection
  • Related topics
    • Microevolution – change in allele frequencies that occurs over time within a population
    • Evolutionary game theory – The application of game theory to evolving populations in biology
    • Fitness landscape – Model used to visualise relationship between genotypes and reproductive success
    • Genetic genealogy – The use of DNA testing in combination with traditional genealogical methods to infer relationships between individuals and find ancestors
    • Quantitative genetics – The study of the inheritance of continuously variable traits

Evolutionary phenomena

Modelling

  • Emergent evolution – The hypothesis that, in the course of evolution, some entirely new properties, such as mind and consciousness, appear at certain critical points
  • Epic of evolution – A narrative that blends religious and scientific views of cosmic, biological and sociocultural evolution in a mythological manner
  • Evolution window – A narrow band of mutation step size that is conducive to significant evolutionary progress
  • Evolutionary dynamics – The study of the mathematical principles according to which biological organisms and cultural ideas evolve
  • Evolutionary game theory – The application of game theory to evolving populations in biology
  • Evolutionary graph theory – An approach to studying how topology affects evolution of a population
  • Evolutionary invasion analysis – Mathematical modeling techniques that use differential equations to study the long-term evolution of traits in asexually reproducing populations
  • Largest-scale trends in evolution – The low end minimum limit for complexity of living organisms may result in a general gradual trend for increased complexity over time

Taxonomy, systematics, and phylogeny

Fundamentals

Life timeline

Life timeline

Basic concepts of phylogenetics

  • Phylogenetic tree – Branching diagram of evolutionary relationships between organisms
  • Phylogenetic network
  • Long branch attraction – A form of systematic error whereby distantly related lineages are incorrectly inferred to be closely related
  • Clade – A group of organisms that consists of a common ancestor and all its lineal descendants
  • Grade – Non-monophyletic grouping of organisms united by morphological or physiological characteristics
  • Ghost lineage – A phylogenetic lineage that is inferred to exist but has no fossil record.

Inference methods

Current topics

Group Traits

  • Symplesiomorphy – An ancestral character or trait state shared by two or more taxa
  • Apomorphy – A shared characteristic that differs from the earlier ancestors that distinguishes a clade from other organisms
  • Synapomorphy – A shared characteristic that differs from the earlier ancestors that distinguishes a clade from other organisms
  • Autapomorphy – A distinctive feature, known as a derived trait, that is unique to a given taxon

Group Types

  • Monophyly – Property of a group of including all taxa descendant from a common ancestral species
  • Paraphyly – Property of a group which includes only descendants of a common ancestor, but excludes at least one monophyletic subgroup
  • Polyphyly – A set of organisms that do not share an immediate common ancestor

Evolution of biodiversity

Origin and evolutionary history of life

Evolution of organisms

Evolution of tetrapods

Evolution of other animals

Evolution of plants

Evolution of other taxa

Evolution of cells, organs, and systems

Evolution of molecules and genes

  • Directed evolution – A method used in protein engineering that mimics the process of natural selection to steer proteins or nucleic acids toward a user-defined goal
  • Error threshold (evolution) – A limit on the number of base pairs a self-replicating molecule may have before mutation will destroy the information in subsequent generations of the molecule
  • Evolution of DNA
  • Gene-centered view of evolution – Reasoning that since heritable information is passed from generation to generation almost exclusively by DNA, natural selection and evolution are best considered from the perspective of genes
  • Genome evolution – The process by which a genome changes in structure or size over time
  • Hologenome theory of evolution – Evolutionary view of an individual multicellular organism as a community of the host plus all of its symbiotic microbes
  • Molecular Evolution – process of change in the sequence composition of cellular molecules across generations
  • Neutral network (evolution) – A set of genes all related by point mutations that have equivalent function or fitness
  • RNA-based evolution – A theory that posits that RNA is a dynamic and independent role-player in determining phenotype

    Creation or Evolution

    Thinking Ape

Evolution of behaviour

  • Co-operation (evolution) – Evolutionary process where groups of organisms work or act together for common or mutual benefits
  • Evolution of biparental care in tropical frogs – The evolution of the behaviour in frogs in which both the mother and father raise their offspring
  • Evolution of emotion – Study of the evolution of emotions
  • Evolution of empathy – The capacity to understand or feel what another person is experiencing
  • Evolution of eusociality – Origins of cooperative brood care, overlapping generations within a colony of adults, and a division of labor into reproductive and non-reproductive groups.
  • Monogamy in animals – The natural history of mating systems in which species pair bond to raise offspring
  • Reciprocal altruism – Behaviour whereby an organism acts in a manner that temporarily reduces its fitness while increasing another organism’s fitness in the expectation of reciprocity
  • Reciprocity (evolution) – Mechanisms whereby the evolution of cooperative or altruistic behaviour may be favoured by the probability of future mutual interactions

Evolution of other processes

Applications in other disciplines

Evolutionary issues

Controversy about evolution

Religious and philosophical views of evolution

Influence of evolutionary theory

Publications and organizations concerning evolution

Books

Journals

Organizations

Evolution scholars and researchers

Prominent evolutionary biologists

See also

FAQ About Creation and Evolution